Mitochondrial genome of the Peruvian scallop Argopecten purpuratus(Bivalvia: Pectinidae)
The mitochondrial genome of the Peruvian scallop Argopecten purpuratus was determined. The length of the mitochondrial coding region is 15,608 bp. A typical bivalve mitochondrial composition was detected with 12 protein-coding genes, 2 ribosomal RNA genes and 21 transfer RNA genes, with the absence...
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2014
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| author | Alan Marín R. Alfaro Takafumi Fujimoto Katsutoshi Arai |
| author_browse | Alan Marín Katsutoshi Arai R. Alfaro Takafumi Fujimoto |
| author_facet | Alan Marín R. Alfaro Takafumi Fujimoto Katsutoshi Arai |
| author_sort | Alan Marín |
| collection | Producción científica |
| description | The mitochondrial genome of the Peruvian scallop Argopecten purpuratus was determined. The length of the mitochondrial coding region is 15,608 bp. A typical bivalve mitochondrial composition was detected with 12 protein-coding genes, 2 ribosomal RNA genes and 21 transfer RNA genes, with the absence of the atp8 gene. Fifty percent of the protein-coding genes use typical ATG start codon, whereas five genes utilize ATA as their start codon. Only one gene was found to utilize TTG as its start codon. The A. purpuratus mitogenome shows a significant similarity to that of A. irradians irradians, in length as well as in gene composition. |
| format | Article |
| id | oai:cris.upeu.edu.pe:20.500.15037/1767 |
| institution | UPeU |
| language | English |
| publishDate | 2014 |
| publishDateRange | 2014 |
| publishDateSort | 2014 |
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| spelling | oai:cris.upeu.edu.pe:20.500.15037/17672026-10-30T16:16:43ZMitochondrial genome of the Peruvian scallop Argopecten purpuratus(Bivalvia: Pectinidae)Alan MarínR. AlfaroTakafumi FujimotoKatsutoshi AraiScallopBiologyMitochondrial DNAGeneStart codonArgopecten irradiansGeneticsTransfer RNAGenomeRibosomal RNAStop codonCodon usage biasRNAFisheryMessenger RNAScallopBiologyMitochondrial DNAGeneStart codonArgopecten irradiansGeneticsTransfer RNAGenomeRibosomal RNAStop codonCodon usage biasRNAFisheryMessenger RNAAnimalsAnimalsAnimalsBase CompositionBase CompositionBase CompositionMitochondria geneticsMitochondria geneticsMitochondria geneticsPeruPeruPeruPhylogenyPhylogenyPhylogenySequence Analysis, DNASequence Analysis, DNASequence Analysis, DNACodon, InitiatorCodon, InitiatorCodon, InitiatorPectinidae geneticsPectinidae geneticsPectinidae geneticsGenome, MitochondrialGenome, MitochondrialGenome, MitochondrialGenome SizeGenome SizeGenome SizePhysical Sciences Environmental Science Ecology Aquatic Invertebrate Ecology and BehaviorPhysical Sciences Environmental Science Global and Planetary Change Marine Bivalve and Aquaculture StudiesLife Sciences Biochemistry, Genetics and Molecular Biology Molecular Biology Genomics and Phylogenetic StudiesThe mitochondrial genome of the Peruvian scallop Argopecten purpuratus was determined. The length of the mitochondrial coding region is 15,608 bp. A typical bivalve mitochondrial composition was detected with 12 protein-coding genes, 2 ribosomal RNA genes and 21 transfer RNA genes, with the absence of the atp8 gene. Fifty percent of the protein-coding genes use typical ATG start codon, whereas five genes utilize ATA as their start codon. Only one gene was found to utilize TTG as its start codon. The A. purpuratus mitogenome shows a significant similarity to that of A. irradians irradians, in length as well as in gene composition.Articlehttps://pubmed.ncbi.nlm.nih.gov/24397768https://eprints.lib.hokudai.ac.jp/dspace/bitstream/2115/60439/1/ManuscriptHUSCAP.pdfhttp://hdl.handle.net/2115/6043910.3109/19401736.2013.845760https://hdl.handle.net/20.500.15037/1767W2106294476enMitochondrial DNA1940-17361940-17442014-01-072026-06-13T14:21:53Z2026-06-13T14:21:53Z |
| spellingShingle | Scallop Biology Mitochondrial DNA Gene Start codon Argopecten irradians Genetics Transfer RNA Genome Ribosomal RNA Stop codon Codon usage bias RNA Fishery Messenger RNA Scallop Biology Mitochondrial DNA Gene Start codon Argopecten irradians Genetics Transfer RNA Genome Ribosomal RNA Stop codon Codon usage bias RNA Fishery Messenger RNA Animals Animals Animals Base Composition Base Composition Base Composition Mitochondria genetics Mitochondria genetics Mitochondria genetics Peru Peru Peru Phylogeny Phylogeny Phylogeny Sequence Analysis, DNA Sequence Analysis, DNA Sequence Analysis, DNA Codon, Initiator Codon, Initiator Codon, Initiator Pectinidae genetics Pectinidae genetics Pectinidae genetics Genome, Mitochondrial Genome, Mitochondrial Genome, Mitochondrial Genome Size Genome Size Genome Size Physical Sciences Environmental Science Ecology Aquatic Invertebrate Ecology and Behavior Physical Sciences Environmental Science Global and Planetary Change Marine Bivalve and Aquaculture Studies Life Sciences Biochemistry, Genetics and Molecular Biology Molecular Biology Genomics and Phylogenetic Studies Alan Marín R. Alfaro Takafumi Fujimoto Katsutoshi Arai Mitochondrial genome of the Peruvian scallop Argopecten purpuratus(Bivalvia: Pectinidae) |
| title | Mitochondrial genome of the Peruvian scallop Argopecten purpuratus(Bivalvia: Pectinidae) |
| title_full | Mitochondrial genome of the Peruvian scallop Argopecten purpuratus(Bivalvia: Pectinidae) |
| title_fullStr | Mitochondrial genome of the Peruvian scallop Argopecten purpuratus(Bivalvia: Pectinidae) |
| title_full_unstemmed | Mitochondrial genome of the Peruvian scallop Argopecten purpuratus(Bivalvia: Pectinidae) |
| title_short | Mitochondrial genome of the Peruvian scallop Argopecten purpuratus(Bivalvia: Pectinidae) |
| title_sort | mitochondrial genome of the peruvian scallop argopecten purpuratus bivalvia pectinidae |
| topic | Scallop Biology Mitochondrial DNA Gene Start codon Argopecten irradians Genetics Transfer RNA Genome Ribosomal RNA Stop codon Codon usage bias RNA Fishery Messenger RNA Scallop Biology Mitochondrial DNA Gene Start codon Argopecten irradians Genetics Transfer RNA Genome Ribosomal RNA Stop codon Codon usage bias RNA Fishery Messenger RNA Animals Animals Animals Base Composition Base Composition Base Composition Mitochondria genetics Mitochondria genetics Mitochondria genetics Peru Peru Peru Phylogeny Phylogeny Phylogeny Sequence Analysis, DNA Sequence Analysis, DNA Sequence Analysis, DNA Codon, Initiator Codon, Initiator Codon, Initiator Pectinidae genetics Pectinidae genetics Pectinidae genetics Genome, Mitochondrial Genome, Mitochondrial Genome, Mitochondrial Genome Size Genome Size Genome Size Physical Sciences Environmental Science Ecology Aquatic Invertebrate Ecology and Behavior Physical Sciences Environmental Science Global and Planetary Change Marine Bivalve and Aquaculture Studies Life Sciences Biochemistry, Genetics and Molecular Biology Molecular Biology Genomics and Phylogenetic Studies |
| topic_facet | Scallop Biology Mitochondrial DNA Gene Start codon Argopecten irradians Genetics Transfer RNA Genome Ribosomal RNA Stop codon Codon usage bias RNA Fishery Messenger RNA Scallop Biology Mitochondrial DNA Gene Start codon Argopecten irradians Genetics Transfer RNA Genome Ribosomal RNA Stop codon Codon usage bias RNA Fishery Messenger RNA Animals Animals Animals Base Composition Base Composition Base Composition Mitochondria genetics Mitochondria genetics Mitochondria genetics Peru Peru Peru Phylogeny Phylogeny Phylogeny Sequence Analysis, DNA Sequence Analysis, DNA Sequence Analysis, DNA Codon, Initiator Codon, Initiator Codon, Initiator Pectinidae genetics Pectinidae genetics Pectinidae genetics Genome, Mitochondrial Genome, Mitochondrial Genome, Mitochondrial Genome Size Genome Size Genome Size Physical Sciences Environmental Science Ecology Aquatic Invertebrate Ecology and Behavior Physical Sciences Environmental Science Global and Planetary Change Marine Bivalve and Aquaculture Studies Life Sciences Biochemistry, Genetics and Molecular Biology Molecular Biology Genomics and Phylogenetic Studies |
| url | https://pubmed.ncbi.nlm.nih.gov/24397768 https://eprints.lib.hokudai.ac.jp/dspace/bitstream/2115/60439/1/ManuscriptHUSCAP.pdf http://hdl.handle.net/2115/60439 https://hdl.handle.net/20.500.15037/1767 |
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