Selection and adaptive introgression guided the complex evolutionary history of the European common bean
Domesticated crops have been disseminated by humans over vast geographic areas. Common bean (Phaseolus vulgaris L.) was introduced in Europe after 1492. Here, by combining whole-genome profiling, metabolic fingerprinting and phenotypic characterisation, we show that the first common bean cultigens s...
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2023
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| _version_ | 1881508952396529664 |
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| author | Elisa Bellucci Andrea Benazzo Chunming Xu Elena Bitocchi Monica Rodriguez Saleh Alseekh Valerio Di Vittori Tania Gioia Kerstin Neumann Gaia Cortinovis Giulia Frascarelli Ester Murube Emiliano Trucchi Laura Nanni Andrea Ariani Giuseppina Logozzo Jin Hee Shin Chaochih Liu Liang Jiang Juan José Ferreira Fernández Ana Čampa Giovanna Attene Peter L. Morrell Giorgio Bertorelle Andreas Graner Paul Gepts Alisdair R. Fernie Scott A. Jackson Roberto Papa |
| author_browse | Alisdair R. Fernie Ana Čampa Andrea Ariani Andrea Benazzo Andreas Graner Chaochih Liu Chunming Xu Elena Bitocchi Elisa Bellucci Emiliano Trucchi Ester Murube Gaia Cortinovis Giorgio Bertorelle Giovanna Attene Giulia Frascarelli Giuseppina Logozzo Jin Hee Shin Juan José Ferreira Fernández Kerstin Neumann Laura Nanni Liang Jiang Monica Rodriguez Paul Gepts Peter L. Morrell Roberto Papa Saleh Alseekh Scott A. Jackson Tania Gioia Valerio Di Vittori |
| author_facet | Elisa Bellucci Andrea Benazzo Chunming Xu Elena Bitocchi Monica Rodriguez Saleh Alseekh Valerio Di Vittori Tania Gioia Kerstin Neumann Gaia Cortinovis Giulia Frascarelli Ester Murube Emiliano Trucchi Laura Nanni Andrea Ariani Giuseppina Logozzo Jin Hee Shin Chaochih Liu Liang Jiang Juan José Ferreira Fernández Ana Čampa Giovanna Attene Peter L. Morrell Giorgio Bertorelle Andreas Graner Paul Gepts Alisdair R. Fernie Scott A. Jackson Roberto Papa |
| author_sort | Elisa Bellucci |
| collection | Producción científica |
| description | Domesticated crops have been disseminated by humans over vast geographic areas. Common bean (Phaseolus vulgaris L.) was introduced in Europe after 1492. Here, by combining whole-genome profiling, metabolic fingerprinting and phenotypic characterisation, we show that the first common bean cultigens successfully introduced into Europe were of Andean origin, after Francisco Pizarro's expedition to northern Peru in 1529. We reveal that hybridisation, selection and recombination have shaped the genomic diversity of the European common bean in parallel with political constraints. There is clear evidence of adaptive introgression into the Mesoamerican-derived European genotypes, with 44 Andean introgressed genomic segments shared by more than 90% of European accessions and distributed across all chromosomes except PvChr11. Genomic scans for signatures of selection highlight the role of genes relevant to flowering and environmental adaptation, suggesting that introgression has been crucial for the dissemination of this tropical crop to the temperate regions of Europe. |
| format | Article |
| id | oai:cris.upeu.edu.pe:20.500.15037/1369 |
| institution | UPeU |
| language | English |
| publishDate | 2023 |
| publishDateRange | 2023 |
| publishDateSort | 2023 |
| record_format | dspace |
| spelling | oai:cris.upeu.edu.pe:20.500.15037/13692026-10-30T16:15:40ZSelection and adaptive introgression guided the complex evolutionary history of the European common beanElisa BellucciAndrea BenazzoChunming XuElena BitocchiMonica RodriguezSaleh AlseekhValerio Di VittoriTania GioiaKerstin NeumannGaia CortinovisGiulia FrascarelliEster MurubeEmiliano TrucchiLaura NanniAndrea ArianiGiuseppina LogozzoJin Hee ShinChaochih LiuLiang JiangJuan José Ferreira FernándezAna ČampaGiovanna AttenePeter L. MorrellGiorgio BertorelleAndreas GranerPaul GeptsAlisdair R. FernieScott A. JacksonRoberto PapaIntrogressionDomesticationBiologyPhaseolusEvolutionary biologyCoalescent theoryGene poolAdaptation (eye)GenomeGenetic diversityGeneticsGenePhylogeneticsBotanyDemographyNeurosciencePopulationSociologyIntrogressionDomesticationBiologyPhaseolusEvolutionary biologyCoalescent theoryGene poolAdaptation (eye)GenomeGenetic diversityGeneticsGenePhylogeneticsBotanyBiological EvolutionBiological EvolutionBiological EvolutionGenotypeGenotypeGenotypeHumansHumansHumansHybridization, GeneticHybridization, GeneticHybridization, GeneticGenetic VariationGenetic VariationGenetic VariationPhaseolus geneticsPhaseolus geneticsPhaseolus geneticsLife Sciences Agricultural and Biological Sciences Plant Science Plant pathogens and resistance mechanismsLife Sciences Biochemistry, Genetics and Molecular Biology Genetics Genetic diversity and population structureLife Sciences Agricultural and Biological Sciences Plant Science Plant Pathogenic Bacteria StudiesDomesticated crops have been disseminated by humans over vast geographic areas. Common bean (Phaseolus vulgaris L.) was introduced in Europe after 1492. Here, by combining whole-genome profiling, metabolic fingerprinting and phenotypic characterisation, we show that the first common bean cultigens successfully introduced into Europe were of Andean origin, after Francisco Pizarro's expedition to northern Peru in 1529. We reveal that hybridisation, selection and recombination have shaped the genomic diversity of the European common bean in parallel with political constraints. There is clear evidence of adaptive introgression into the Mesoamerican-derived European genotypes, with 44 Andean introgressed genomic segments shared by more than 90% of European accessions and distributed across all chromosomes except PvChr11. Genomic scans for signatures of selection highlight the role of genes relevant to flowering and environmental adaptation, suggesting that introgression has been crucial for the dissemination of this tropical crop to the temperate regions of Europe.Articlehttps://pubmed.ncbi.nlm.nih.gov/37019898https://www.nature.com/articles/s41467-023-37332-z.pdfhttps://doi.org/10.1038/s41467-023-37332-z10.1038/s41467-023-37332-zhttps://hdl.handle.net/20.500.15037/1369W4362604532enNature Communications2041-17232023-04-052026-06-13T09:55:46Z2026-06-13T09:55:46Z |
| spellingShingle | Introgression Domestication Biology Phaseolus Evolutionary biology Coalescent theory Gene pool Adaptation (eye) Genome Genetic diversity Genetics Gene Phylogenetics Botany Demography Neuroscience Population Sociology Introgression Domestication Biology Phaseolus Evolutionary biology Coalescent theory Gene pool Adaptation (eye) Genome Genetic diversity Genetics Gene Phylogenetics Botany Biological Evolution Biological Evolution Biological Evolution Genotype Genotype Genotype Humans Humans Humans Hybridization, Genetic Hybridization, Genetic Hybridization, Genetic Genetic Variation Genetic Variation Genetic Variation Phaseolus genetics Phaseolus genetics Phaseolus genetics Life Sciences Agricultural and Biological Sciences Plant Science Plant pathogens and resistance mechanisms Life Sciences Biochemistry, Genetics and Molecular Biology Genetics Genetic diversity and population structure Life Sciences Agricultural and Biological Sciences Plant Science Plant Pathogenic Bacteria Studies Elisa Bellucci Andrea Benazzo Chunming Xu Elena Bitocchi Monica Rodriguez Saleh Alseekh Valerio Di Vittori Tania Gioia Kerstin Neumann Gaia Cortinovis Giulia Frascarelli Ester Murube Emiliano Trucchi Laura Nanni Andrea Ariani Giuseppina Logozzo Jin Hee Shin Chaochih Liu Liang Jiang Juan José Ferreira Fernández Ana Čampa Giovanna Attene Peter L. Morrell Giorgio Bertorelle Andreas Graner Paul Gepts Alisdair R. Fernie Scott A. Jackson Roberto Papa Selection and adaptive introgression guided the complex evolutionary history of the European common bean |
| title | Selection and adaptive introgression guided the complex evolutionary history of the European common bean |
| title_full | Selection and adaptive introgression guided the complex evolutionary history of the European common bean |
| title_fullStr | Selection and adaptive introgression guided the complex evolutionary history of the European common bean |
| title_full_unstemmed | Selection and adaptive introgression guided the complex evolutionary history of the European common bean |
| title_short | Selection and adaptive introgression guided the complex evolutionary history of the European common bean |
| title_sort | selection and adaptive introgression guided the complex evolutionary history of the european common bean |
| topic | Introgression Domestication Biology Phaseolus Evolutionary biology Coalescent theory Gene pool Adaptation (eye) Genome Genetic diversity Genetics Gene Phylogenetics Botany Demography Neuroscience Population Sociology Introgression Domestication Biology Phaseolus Evolutionary biology Coalescent theory Gene pool Adaptation (eye) Genome Genetic diversity Genetics Gene Phylogenetics Botany Biological Evolution Biological Evolution Biological Evolution Genotype Genotype Genotype Humans Humans Humans Hybridization, Genetic Hybridization, Genetic Hybridization, Genetic Genetic Variation Genetic Variation Genetic Variation Phaseolus genetics Phaseolus genetics Phaseolus genetics Life Sciences Agricultural and Biological Sciences Plant Science Plant pathogens and resistance mechanisms Life Sciences Biochemistry, Genetics and Molecular Biology Genetics Genetic diversity and population structure Life Sciences Agricultural and Biological Sciences Plant Science Plant Pathogenic Bacteria Studies |
| topic_facet | Introgression Domestication Biology Phaseolus Evolutionary biology Coalescent theory Gene pool Adaptation (eye) Genome Genetic diversity Genetics Gene Phylogenetics Botany Demography Neuroscience Population Sociology Introgression Domestication Biology Phaseolus Evolutionary biology Coalescent theory Gene pool Adaptation (eye) Genome Genetic diversity Genetics Gene Phylogenetics Botany Biological Evolution Biological Evolution Biological Evolution Genotype Genotype Genotype Humans Humans Humans Hybridization, Genetic Hybridization, Genetic Hybridization, Genetic Genetic Variation Genetic Variation Genetic Variation Phaseolus genetics Phaseolus genetics Phaseolus genetics Life Sciences Agricultural and Biological Sciences Plant Science Plant pathogens and resistance mechanisms Life Sciences Biochemistry, Genetics and Molecular Biology Genetics Genetic diversity and population structure Life Sciences Agricultural and Biological Sciences Plant Science Plant Pathogenic Bacteria Studies |
| url | https://pubmed.ncbi.nlm.nih.gov/37019898 https://www.nature.com/articles/s41467-023-37332-z.pdf https://doi.org/10.1038/s41467-023-37332-z https://hdl.handle.net/20.500.15037/1369 |
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