Molecular detection of carbapenemases in critical microorganisms since the onset of the COVID-19 pandemic in Peru
Abstract Objective Identify and characterize carbapenemase genes in bacterial isolates of Enterobacterales, Acinetobacter baumannii, and Pseudomonas aeruginosa collected through the National Surveillance of Antimicrobial Resistance (AMR) Program during the COVID-19 pandemic in Peru. Methods This ret...
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2025
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| author | Maritza Mayta-Barrios Juan Ramírez-Illescas Juan Pacori Joshi Acosta Luis Pampa-Espinoza Javier Silva‐Valencia Alicia Núñez-Llanos Celinda Bendezú Kevin Serrano Martín Yagui Working group in the national surveillance of antimicrobial resistance T Dijango G. Rosas Heyul Chavez María J. Cano A Urbano Raquel Hernandez Aaron Salazar K Amaro E Salazar Juan David Figueroa J Diaz M Cruzado Fernando Prı́ncipe Beth Paredes Carol Paucar Roy Sandoval María Eugenia Quevedo Chávez Etelvina Archundia Sierra Carlos Rodríguez Rojas Calixto Librado Valera Diego Fernando García Bohórquez Georgina Salvador Carolina Cucho-Espinoza Jesús Huerta de Soto R Pissani T Huaytaya Germán Brito Sosa Thalía Amparito Dávila Vela C. LUIS A. QUISPE P Virna Karina de Lourdes Serrano Paredes A. Olivares Pablo Berríos Elizabeth Tapia Javier Lagos-Servellón Ana Paula Beltrán Moschione Castro J Alva Dolors Palacín F Cárdenas Noëlie Campos Joselit Torres M Rodrı́guez E Mezarina N Manchaca Katty Castillo Jorge E. Zambrano L Tacanga Irene Salinas Alice Martin Miguel Á. Ruiz Miriam Cabrera Jiménez Cristina Encinas Javier Arias‐Díaz Alejandra Rivera Sergio Padilla Nedeljko Tica Mónica Gutiérrez A Yovera R Sipión Manuel Ramos Patricia Cornejo Armando Sánchez Vargas M Galindo Rúben Ramos Carla Cristina de Araújo David Rufo J Curo G Shaveta Agustín Urcia O Fernández Heidi Contreras I Rivadeneyra J Herrera Ana M. Briones Dalia María Soto Valdez Jesus Pino Ernest Gonzales Gustavo Liendo-Polanco D Cayulla Roberto Palacios Deborah Dos Reis Estrella Nicolás M. Suárez W. Ortiz |
| author_browse | A Urbano A Yovera A. Olivares Aaron Salazar Agustín Urcia Alejandra Rivera Alice Martin Alicia Núñez-Llanos Ana M. Briones Ana Paula Beltrán Moschione Castro Armando Sánchez Vargas Beth Paredes C. LUIS A. QUISPE Calixto Librado Valera Carla Cristina de Araújo Carlos Rodríguez Rojas Carol Paucar Carolina Cucho-Espinoza Celinda Bendezú Cristina Encinas D Cayulla Dalia María Soto Valdez David Rufo Deborah Dos Reis Estrella Diego Fernando García Bohórquez Dolors Palacín E Mezarina E Salazar Elizabeth Tapia Ernest Gonzales Etelvina Archundia Sierra F Cárdenas Fernando Prı́ncipe G Shaveta G. Rosas Georgina Salvador Germán Brito Sosa Gustavo Liendo-Polanco Heidi Contreras Heyul Chavez I Rivadeneyra Irene Salinas J Alva J Curo J Diaz J Herrera Javier Arias‐Díaz Javier Lagos-Servellón Javier Silva‐Valencia Jesus Pino Jesús Huerta de Soto Jorge E. Zambrano Joselit Torres Joshi Acosta Juan David Figueroa Juan Pacori Juan Ramírez-Illescas K Amaro Karina de Lourdes Serrano Paredes Katty Castillo Kevin Serrano L Tacanga Luis Pampa-Espinoza M Cruzado M Galindo M Rodrı́guez Manuel Ramos Maritza Mayta-Barrios Martín Yagui María Eugenia Quevedo Chávez María J. Cano Miguel Á. Ruiz Miriam Cabrera Jiménez Mónica Gutiérrez N Manchaca Nedeljko Tica Nicolás M. Suárez Noëlie Campos O Fernández P Virna Pablo Berríos Patricia Cornejo R Pissani R Sipión Raquel Hernandez Roberto Palacios Roy Sandoval Rúben Ramos Sergio Padilla T Dijango T Huaytaya Thalía Amparito Dávila Vela W. Ortiz Working group in the national surveillance of antimicrobial resistance |
| author_facet | Maritza Mayta-Barrios Juan Ramírez-Illescas Juan Pacori Joshi Acosta Luis Pampa-Espinoza Javier Silva‐Valencia Alicia Núñez-Llanos Celinda Bendezú Kevin Serrano Martín Yagui Working group in the national surveillance of antimicrobial resistance T Dijango G. Rosas Heyul Chavez María J. Cano A Urbano Raquel Hernandez Aaron Salazar K Amaro E Salazar Juan David Figueroa J Diaz M Cruzado Fernando Prı́ncipe Beth Paredes Carol Paucar Roy Sandoval María Eugenia Quevedo Chávez Etelvina Archundia Sierra Carlos Rodríguez Rojas Calixto Librado Valera Diego Fernando García Bohórquez Georgina Salvador Carolina Cucho-Espinoza Jesús Huerta de Soto R Pissani T Huaytaya Germán Brito Sosa Thalía Amparito Dávila Vela C. LUIS A. QUISPE P Virna Karina de Lourdes Serrano Paredes A. Olivares Pablo Berríos Elizabeth Tapia Javier Lagos-Servellón Ana Paula Beltrán Moschione Castro J Alva Dolors Palacín F Cárdenas Noëlie Campos Joselit Torres M Rodrı́guez E Mezarina N Manchaca Katty Castillo Jorge E. Zambrano L Tacanga Irene Salinas Alice Martin Miguel Á. Ruiz Miriam Cabrera Jiménez Cristina Encinas Javier Arias‐Díaz Alejandra Rivera Sergio Padilla Nedeljko Tica Mónica Gutiérrez A Yovera R Sipión Manuel Ramos Patricia Cornejo Armando Sánchez Vargas M Galindo Rúben Ramos Carla Cristina de Araújo David Rufo J Curo G Shaveta Agustín Urcia O Fernández Heidi Contreras I Rivadeneyra J Herrera Ana M. Briones Dalia María Soto Valdez Jesus Pino Ernest Gonzales Gustavo Liendo-Polanco D Cayulla Roberto Palacios Deborah Dos Reis Estrella Nicolás M. Suárez W. Ortiz |
| author_sort | Maritza Mayta-Barrios |
| collection | Producción científica |
| description | Abstract Objective Identify and characterize carbapenemase genes in bacterial isolates of Enterobacterales, Acinetobacter baumannii, and Pseudomonas aeruginosa collected through the National Surveillance of Antimicrobial Resistance (AMR) Program during the COVID-19 pandemic in Peru. Methods This retrospective, observational study analysed 2049 submitted due to suspected portability of carbapenemase genes, collected between January 2020 and August 2022. Samples were obtained from 61 hospitals in 18 of the 25 regions of Peru (72%) that participated in the National Surveillance AMR Program. Results Among the isolates, 860 were Enterobacterales, 771 were A. baumannii, and 418 were P. aeruginosa. Carbapenemase genes were detected in 1735 isolates (84,6%). The most prevalent genes identified were blaNDM (561, 78.13%) in Enterobacterales, blaOXA-24-like (488, 67.8%) in A. baumannii, and blaIMP (188, 63.3%) in P. aeruginosa. Notably, rare occurrences of blaNDM were identified in P. aeruginosa (5, 1.7%). Combinations of carbapenemase genes were identified including blaIMP + blaVIM in P. aeruginosa, with a rising trend, but also blaKPC + blaNDM (7, 1%) blaNDM + blaOXA-48-like (1, 0.14%), blaNDM + blaIMP (2, 0.3%), and blaNDM + blaVIM (2, 0.3%) in Enterobacterales; and blaOXA-23 + blaOXA-24-like (11, 1.5%), blaNDM + blaOXA-24-like (2, 0.3%), and blaNDM + blaOXA-58-like (1, 0.1%) in A. baumannii. Conclusion This study highlights the significant detection of carbapenemase genes and their combinations in Peru during the COVID-19 pandemic. These findings underscore the urgent need for enhanced AMR surveillance, antimicrobial stewardship, and targeted infection control strategies to address this critical public health threat. |
| format | Article |
| id | oai:cris.upeu.edu.pe:20.500.15037/1346 |
| institution | UPeU |
| language | English |
| publishDate | 2025 |
| publishDateRange | 2025 |
| publishDateSort | 2025 |
| record_format | dspace |
| spelling | oai:cris.upeu.edu.pe:20.500.15037/13462026-10-30T16:15:37ZMolecular detection of carbapenemases in critical microorganisms since the onset of the COVID-19 pandemic in PeruMaritza Mayta-BarriosJuan Ramírez-IllescasJuan PacoriJoshi AcostaLuis Pampa-EspinozaJavier Silva‐ValenciaAlicia Núñez-LlanosCelinda BendezúKevin SerranoMartín YaguiWorking group in the national surveillance of antimicrobial resistanceT DijangoG. RosasHeyul ChavezMaría J. CanoA UrbanoRaquel HernandezAaron SalazarK AmaroE SalazarJuan David FigueroaJ DiazM CruzadoFernando Prı́ncipeBeth ParedesCarol PaucarRoy SandovalMaría Eugenia Quevedo ChávezEtelvina Archundia SierraCarlos Rodríguez RojasCalixto Librado ValeraDiego Fernando García BohórquezGeorgina SalvadorCarolina Cucho-EspinozaJesús Huerta de SotoR PissaniT HuaytayaGermán Brito SosaThalía Amparito Dávila VelaC. LUIS A. QUISPEP VirnaKarina de Lourdes Serrano ParedesA. OlivaresPablo BerríosElizabeth TapiaJavier Lagos-ServellónAna Paula Beltrán Moschione CastroJ AlvaDolors PalacínF CárdenasNoëlie CamposJoselit TorresM Rodrı́guezE MezarinaN ManchacaKatty CastilloJorge E. ZambranoL TacangaIrene SalinasAlice MartinMiguel Á. RuizMiriam Cabrera JiménezCristina EncinasJavier Arias‐DíazAlejandra RiveraSergio PadillaNedeljko TicaMónica GutiérrezA YoveraR SipiónManuel RamosPatricia CornejoArmando Sánchez VargasM GalindoRúben RamosCarla Cristina de AraújoDavid RufoJ CuroG ShavetaAgustín UrciaO FernándezHeidi ContrerasI RivadeneyraJ HerreraAna M. BrionesDalia María Soto ValdezJesus PinoErnest GonzalesGustavo Liendo-PolancoD CayullaRoberto PalaciosDeborah Dos Reis EstrellaNicolás M. SuárezW. OrtizPandemicVirologyBiologyMicrobiologyInfection controlPublic healthAntimicrobialMedicineDisease controlAntibioticsBacteriaGenomeCoronavirus disease 2019 (COVID-19)GeneAntimicrobial stewardshipMicroorganismSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)DiseaseAntibiotic resistanceMolecular diagnosticsImmunologyOutbreak2019-20 coronavirus outbreakColistinMolecular epidemiologyPandemicInfection controlPublic healthAntimicrobialDisease controlAntibioticsBacteriaGenomeLife Sciences Biochemistry, Genetics and Molecular Biology Molecular Medicine Antibiotic Resistance in BacteriaLife Sciences Immunology and Microbiology Applied Microbiology and Biotechnology Antibiotic Use and ResistanceLife Sciences Biochemistry, Genetics and Molecular Biology Clinical Biochemistry Bacterial Identification and Susceptibility TestingAbstract Objective Identify and characterize carbapenemase genes in bacterial isolates of Enterobacterales, Acinetobacter baumannii, and Pseudomonas aeruginosa collected through the National Surveillance of Antimicrobial Resistance (AMR) Program during the COVID-19 pandemic in Peru. Methods This retrospective, observational study analysed 2049 submitted due to suspected portability of carbapenemase genes, collected between January 2020 and August 2022. Samples were obtained from 61 hospitals in 18 of the 25 regions of Peru (72%) that participated in the National Surveillance AMR Program. Results Among the isolates, 860 were Enterobacterales, 771 were A. baumannii, and 418 were P. aeruginosa. Carbapenemase genes were detected in 1735 isolates (84,6%). The most prevalent genes identified were blaNDM (561, 78.13%) in Enterobacterales, blaOXA-24-like (488, 67.8%) in A. baumannii, and blaIMP (188, 63.3%) in P. aeruginosa. Notably, rare occurrences of blaNDM were identified in P. aeruginosa (5, 1.7%). Combinations of carbapenemase genes were identified including blaIMP + blaVIM in P. aeruginosa, with a rising trend, but also blaKPC + blaNDM (7, 1%) blaNDM + blaOXA-48-like (1, 0.14%), blaNDM + blaIMP (2, 0.3%), and blaNDM + blaVIM (2, 0.3%) in Enterobacterales; and blaOXA-23 + blaOXA-24-like (11, 1.5%), blaNDM + blaOXA-24-like (2, 0.3%), and blaNDM + blaOXA-58-like (1, 0.1%) in A. baumannii. Conclusion This study highlights the significant detection of carbapenemase genes and their combinations in Peru during the COVID-19 pandemic. These findings underscore the urgent need for enhanced AMR surveillance, antimicrobial stewardship, and targeted infection control strategies to address this critical public health threat.Articlehttps://pubmed.ncbi.nlm.nih.gov/41210187https://doi.org/10.1093/jacamr/dlaf20310.1093/jacamr/dlaf203https://hdl.handle.net/20.500.15037/1346W4416606309enJAC-Antimicrobial Resistance2632-18232025-10-302026-06-13T09:54:16Z2026-06-13T09:54:16Z |
| spellingShingle | Pandemic Virology Biology Microbiology Infection control Public health Antimicrobial Medicine Disease control Antibiotics Bacteria Genome Coronavirus disease 2019 (COVID-19) Gene Antimicrobial stewardship Microorganism Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Disease Antibiotic resistance Molecular diagnostics Immunology Outbreak 2019-20 coronavirus outbreak Colistin Molecular epidemiology Pandemic Infection control Public health Antimicrobial Disease control Antibiotics Bacteria Genome Life Sciences Biochemistry, Genetics and Molecular Biology Molecular Medicine Antibiotic Resistance in Bacteria Life Sciences Immunology and Microbiology Applied Microbiology and Biotechnology Antibiotic Use and Resistance Life Sciences Biochemistry, Genetics and Molecular Biology Clinical Biochemistry Bacterial Identification and Susceptibility Testing Maritza Mayta-Barrios Juan Ramírez-Illescas Juan Pacori Joshi Acosta Luis Pampa-Espinoza Javier Silva‐Valencia Alicia Núñez-Llanos Celinda Bendezú Kevin Serrano Martín Yagui Working group in the national surveillance of antimicrobial resistance T Dijango G. Rosas Heyul Chavez María J. Cano A Urbano Raquel Hernandez Aaron Salazar K Amaro E Salazar Juan David Figueroa J Diaz M Cruzado Fernando Prı́ncipe Beth Paredes Carol Paucar Roy Sandoval María Eugenia Quevedo Chávez Etelvina Archundia Sierra Carlos Rodríguez Rojas Calixto Librado Valera Diego Fernando García Bohórquez Georgina Salvador Carolina Cucho-Espinoza Jesús Huerta de Soto R Pissani T Huaytaya Germán Brito Sosa Thalía Amparito Dávila Vela C. LUIS A. QUISPE P Virna Karina de Lourdes Serrano Paredes A. Olivares Pablo Berríos Elizabeth Tapia Javier Lagos-Servellón Ana Paula Beltrán Moschione Castro J Alva Dolors Palacín F Cárdenas Noëlie Campos Joselit Torres M Rodrı́guez E Mezarina N Manchaca Katty Castillo Jorge E. Zambrano L Tacanga Irene Salinas Alice Martin Miguel Á. Ruiz Miriam Cabrera Jiménez Cristina Encinas Javier Arias‐Díaz Alejandra Rivera Sergio Padilla Nedeljko Tica Mónica Gutiérrez A Yovera R Sipión Manuel Ramos Patricia Cornejo Armando Sánchez Vargas M Galindo Rúben Ramos Carla Cristina de Araújo David Rufo J Curo G Shaveta Agustín Urcia O Fernández Heidi Contreras I Rivadeneyra J Herrera Ana M. Briones Dalia María Soto Valdez Jesus Pino Ernest Gonzales Gustavo Liendo-Polanco D Cayulla Roberto Palacios Deborah Dos Reis Estrella Nicolás M. Suárez W. Ortiz Molecular detection of carbapenemases in critical microorganisms since the onset of the COVID-19 pandemic in Peru |
| title | Molecular detection of carbapenemases in critical microorganisms since the onset of the COVID-19 pandemic in Peru |
| title_full | Molecular detection of carbapenemases in critical microorganisms since the onset of the COVID-19 pandemic in Peru |
| title_fullStr | Molecular detection of carbapenemases in critical microorganisms since the onset of the COVID-19 pandemic in Peru |
| title_full_unstemmed | Molecular detection of carbapenemases in critical microorganisms since the onset of the COVID-19 pandemic in Peru |
| title_short | Molecular detection of carbapenemases in critical microorganisms since the onset of the COVID-19 pandemic in Peru |
| title_sort | molecular detection of carbapenemases in critical microorganisms since the onset of the covid 19 pandemic in peru |
| topic | Pandemic Virology Biology Microbiology Infection control Public health Antimicrobial Medicine Disease control Antibiotics Bacteria Genome Coronavirus disease 2019 (COVID-19) Gene Antimicrobial stewardship Microorganism Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Disease Antibiotic resistance Molecular diagnostics Immunology Outbreak 2019-20 coronavirus outbreak Colistin Molecular epidemiology Pandemic Infection control Public health Antimicrobial Disease control Antibiotics Bacteria Genome Life Sciences Biochemistry, Genetics and Molecular Biology Molecular Medicine Antibiotic Resistance in Bacteria Life Sciences Immunology and Microbiology Applied Microbiology and Biotechnology Antibiotic Use and Resistance Life Sciences Biochemistry, Genetics and Molecular Biology Clinical Biochemistry Bacterial Identification and Susceptibility Testing |
| topic_facet | Pandemic Virology Biology Microbiology Infection control Public health Antimicrobial Medicine Disease control Antibiotics Bacteria Genome Coronavirus disease 2019 (COVID-19) Gene Antimicrobial stewardship Microorganism Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Disease Antibiotic resistance Molecular diagnostics Immunology Outbreak 2019-20 coronavirus outbreak Colistin Molecular epidemiology Pandemic Infection control Public health Antimicrobial Disease control Antibiotics Bacteria Genome Life Sciences Biochemistry, Genetics and Molecular Biology Molecular Medicine Antibiotic Resistance in Bacteria Life Sciences Immunology and Microbiology Applied Microbiology and Biotechnology Antibiotic Use and Resistance Life Sciences Biochemistry, Genetics and Molecular Biology Clinical Biochemistry Bacterial Identification and Susceptibility Testing |
| url | https://pubmed.ncbi.nlm.nih.gov/41210187 https://doi.org/10.1093/jacamr/dlaf203 https://hdl.handle.net/20.500.15037/1346 |
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moleculardetectionofcarbapenemasesincriticalmicroorganismssincetheonsetofthecovid19pandemicinperu AT irivadeneyra moleculardetectionofcarbapenemasesincriticalmicroorganismssincetheonsetofthecovid19pandemicinperu AT jherrera moleculardetectionofcarbapenemasesincriticalmicroorganismssincetheonsetofthecovid19pandemicinperu AT anambriones moleculardetectionofcarbapenemasesincriticalmicroorganismssincetheonsetofthecovid19pandemicinperu AT daliamariasotovaldez moleculardetectionofcarbapenemasesincriticalmicroorganismssincetheonsetofthecovid19pandemicinperu AT jesuspino moleculardetectionofcarbapenemasesincriticalmicroorganismssincetheonsetofthecovid19pandemicinperu AT ernestgonzales moleculardetectionofcarbapenemasesincriticalmicroorganismssincetheonsetofthecovid19pandemicinperu AT gustavoliendopolanco moleculardetectionofcarbapenemasesincriticalmicroorganismssincetheonsetofthecovid19pandemicinperu AT dcayulla moleculardetectionofcarbapenemasesincriticalmicroorganismssincetheonsetofthecovid19pandemicinperu AT robertopalacios moleculardetectionofcarbapenemasesincriticalmicroorganismssincetheonsetofthecovid19pandemicinperu AT deborahdosreisestrella moleculardetectionofcarbapenemasesincriticalmicroorganismssincetheonsetofthecovid19pandemicinperu AT nicolasmsuarez moleculardetectionofcarbapenemasesincriticalmicroorganismssincetheonsetofthecovid19pandemicinperu AT wortiz moleculardetectionofcarbapenemasesincriticalmicroorganismssincetheonsetofthecovid19pandemicinperu |